My current best pokemon list stands at the following:

Abra 485cp
Aerodactyl 1790cp
Arbok 978cp
Beedrill 998cp
Bellsprout 510cp
Bulbasaur 534cp
Butterfree 834cp
Caterpie 172cp
Chansey 796cp
Charmander 461cp
Clefable 998cp
Clefairy 410cp
Cleffa 355cp
Cloyster 1384cp
Cubone 467cp
Diglett 202cp
Ditto 236cp
Doduo 543cp
Dragonair 543cp
Dratini 187cp
Drowzee 568cp
Eevee 533cp
Ekans 50cp
Electabuzz 1042cp
Fearow 1062cp
Flareon 1680cp
Gastly 520cp
Gengar 1237cp
Geodude 544cp
Gloom 629cp
Golbat 1088cp
Goldee 556cp
Golduck 1277cp
Graveler 976cp
Grimer 583cp
Growlithe 157cp
Haunter 956cp
Hitmonlee 1379cp
Hitmonchan 66cp
Horsea 424cp
Hypno 1150cp
Igglybuff 289cp
Jigglypuff 312cp
Jolteon 1502cp
Jynx 1645cp
Kadabra 1038cp
Kakuna 204cp
Kingler 1508cp
Koffing 584cp
Krabby 739cp
Machoke 1074cp
Machop 641cp
Magikarp 81cp
Magnemite 607cp
Magneton 1167cp
Mankey 194cp
Marowak 711cp
Meowth 319cp
Metapod 206cp
Mr Mime 1105cp
Nidoking 1345cp
Nidoran Female 406cp
Nidoran Male 415cp
Nidorina 578cp
Nidorino 359cp
Oddish 583cp
Onix 615cp
Paras 373cp
Parasect 864cp
Persian 852cp
Pidgeot 1063cp
Pidgeotto 608cp
Pidgey 293cp
Pikachu 433cp
Pinsir 1574cp
Poliwag 193cp
Poliwhirl 293cp
Poliwrath 605cp
Ponyta 691cp
Psyduck 507cp
Raticate 886cp
Rattata 287cp
Rhydon 1809cp
Rhyhorn 879cp
Sandshrew 650cp
Seadra 1128cp
Seaking 1168cp
Seel 515cp
Shelder 516cp
Slowpoke 672cp
Spearow 336cp
Squirtle 370cp
Starmie 1251cp
Staryu 558cp
Tangela 1234cp
Tentacool 529cp
Vaporeon 1680cp
Venomoth 1269cp
Venonat 445cp
Victreebel 1462cp
Vileplume 1307cp
Voltorb 511cp
Vulpix 451cp
Wartortle 292cp
Weedle 204cp
Weepinbell 626cp
Weezing 626cp
Wigglytuff 1056cp
Zubat 277cp

Therefore the pokemon I still need are:
Ivysaur
Venusaur
Charmeleon 
Charizard
Blastoise
Raichu
Sandslash
Nidoqueen
Ninetales
Dugtrio
Primeape
Arcanine 
Alakazam
Machamp
Tentacruel
Golem
Rapidash
Slowbro
Farfet'chd
Dotrio
Dewgong
Muk
Electrodude
Eggsecute
Exeggutor
Lickitung
Scyther
Magmar
Tauros
Gyarados
Lapras
Porygon
Omanyte
Omastar
Kabuto
Kabutops
Snorlax
Zapdos
Articuno
Moltres
Dragonite
Mew
Mew 2
Kangaskhan
All new baby pokemon except cleffa and igglybuff